ConferenceCall 2023 04 12 - Revision history

Forum at 16:39, 1 June 2023

2023-06-01T16:39:54Z

← Older revision		Revision as of 16:39, 1 June 2023
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	== Resources ==		== Resources ==
			* [https://bit.ly/3GVurTf Video Recording]
			* [https://youtu.be/Vu6VftZ52V0 Video Recording on YouTube]

	== Previous Meetings ==		== Previous Meetings ==

Forum: /* Attendees */

2023-05-30T20:03:36Z

Attendees

← Older revision		Revision as of 20:03, 30 May 2023
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	== Attendees ==		== Attendees ==
	* ~~[[AlexanderDiehl\|~~Alexander Diehl]]		* Alexander Diehl
	* [[AlexShkotin\|Alex Shkotin]]		* [[AlexShkotin\|Alex Shkotin]]
	* ~~[[AllenBaron\|~~Allen Baron]]		* Allen Baron
	* ~~[[AsiyahLin\|~~Asiyah Lin]]		* Asiyah Lin
	* ~~[[ChrisKindermann\|~~Chris Kindermann]]		* Chris Kindermann
	* ~~[[ChrisMungall\|~~Chris Mungall]]		* Chris Mungall
	* [[DamionDooley\|Damion Dooley]]		* [[DamionDooley\|Damion Dooley]]
	* [[GaryBergCross\|Gary Berg-Cross]]		* [[GaryBergCross\|Gary Berg-Cross]]
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	* [[JanetSinger\|Janet Singer]]		* [[JanetSinger\|Janet Singer]]
	* [[KenBaclawski\|Ken Baclawski]]		* [[KenBaclawski\|Ken Baclawski]]
	* [[Leigh Carmody~~\|Leigh Carmody]]~~		* Leigh Carmody
	* [[MarkRessler\|Mark Ressler]]		* [[MarkRessler\|Mark Ressler]]
	* [[MikeBennett\|Mike Bennett]]		* [[MikeBennett\|Mike Bennett]]
	* [[Patrick Logan~~\|Patrick Logan]]~~		* Patrick Logan
	* [[RaviSharma\|Ravi Sharma]]		* [[RaviSharma\|Ravi Sharma]]
	* ~~[[RhiannonCameron\|~~Rhiannon Cameron]]		* Rhiannon Cameron
	* [[RussellReinsch\|Russell Reinsch]]		* [[RussellReinsch\|Russell Reinsch]]
	* ~~[[SabrinaToro\|~~Sabrina Toro]]		* Sabrina Toro
	* ~~[[SusanBello\|~~Susan Bello]]		* Susan Bello
	* [[TorstenHahmann\|Torsten Hahmann]]		* [[TorstenHahmann\|Torsten Hahmann]]

Forum at 20:00, 30 May 2023

2023-05-30T20:00:56Z

← Older revision		Revision as of 20:00, 30 May 2023
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	{{:OntologySummit2023/ConferenceCallInformation}}		{{:OntologySummit2023/ConferenceCallInformation}}

			== Attendees ==
	* [[AlexanderDiehl\|Alexander Diehl]]		* [[AlexanderDiehl\|Alexander Diehl]]
	* [[AlexShkotin\|Alex Shkotin]]		* [[AlexShkotin\|Alex Shkotin]]

Forum: /* Discussion */

2023-05-30T20:00:20Z

Discussion

← Older revision		Revision as of 20:00, 30 May 2023
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	== Discussion ==		== Discussion ==
			[12:14] RaviSharma: Sierra - is LinkML a language translator or is more than that namely language API integrator or allows interoperation by meaningfully Querying using these different languages

			[12:16] Kai Blumberg: Looks like my PhD thesis work

			[12:17] Chris Mungall: It's not really either. It's a modeling framework

			[12:18] RaviSharma: then how does it relate to various languages shown by

			[12:18] RaviSharma: For those of you that have been around the ontolog group for a while, the closest analog is Frames. But a key difference is that is allows translation to other frameworks, whether semantic (e.g SHACL) or more traditional (e.g. JSON-Schema)

			[12:25] RaviSharma: Asiyah -Ramona hopes to have single integrated very difficult. acceptable ontology which is

			[12:26] RaviSharma: very difficult.

			[12:27] Gary Berg-Cross: Our speaker next week, Martin, will be talking about using ontology templates to make Ont development easier.

			[12:31] RaviSharma: It is so difficult to reach both consensus as well as data meanings

			[12:33] RaviSharma: Internet does not have to make sense but ontology is meant for meaningful relations among entities?

			[12:34] Damion Dooley: The unified ontology family effort is basically like the development of Esperanto, but for the science and data science community. Have to create/learn the syntax and grammar, and test it out over and over in expressing things. Like going to school in Groundhog Day movie!

			[12:38] RaviSharma: Asiyah - the real problem is that OWL is not semantics inclusive? It related only to URLs etc.

			[12:38] RaviSharma: RDF framework is what we mean

			[12:39] RaviSharma: Data element is not a rich enough concept but data combinations at information level is amenable to semantics!

			[12:43] Chris Mungall: I am not sure I agree OWL is only related to URLs. These are just identifiers as far as the OWL semantics is concerned (and in fact any IRI can be used)

			[12:47] RaviSharma: Torsten - hence domain ref ont addresses what John sowa tells us namely logic. reasoning etc for ontology

			[12:48] RaviSharma: How will you use DRO and domain ontology

			[12:50] Nico Matentzoglu: Domain reference ontology is a good term I think and we could adopt it for OBO. The goal for OBO 2024 would be to separate domain reference ontologies from domain ontologies and promote increase dependency on domain reference ontologies and decrease dependency on domain ontologies.

			[12:50] Asiyah: @Ravi, the CDE is more granular than ontology. But to harmonize the CDEs we need standard terms that is defined and with semantics. The best is that people will try to use ontology terms for their CDEs instead of creating their own variation. The famous example is age.

			[12:52] RaviSharma: Torsten are you trying to model ontology and are you creating physics model backed by Logic and inference?

			[12:53] RaviSharma: Torsten how would you connect HyFO and FEO

			[12:54] janet singer: Damien, Are you speaking about unified ontology family efforts in general or about a particular project?

			[12:54] Nico Matentzoglu: Oh I think I misunderstood something. Seems the domain reference ontology would be more like COB, not eg Uberon..

			[12:54] Kai Blumberg: That's my interpretation but I could be wrong

			[12:55] James Overton: I hadn't heard of macleod before. Is it simpler to set up and use than HETS?

			[12:57] Damion Dooley: @janet It was a general comment - the challenge of creating an Esperanto style language, whichever ontology community one participates in.

			[12:58] Damion Dooley: But of course this is what we face in OBO community.

			[13:03] janet singer: @Damion, Yes that's a good point. Of course Esperanto fell far short of expectations, so a good topic to explore is why that's been the case. And what could be done differently

			[13:03] RaviSharma: From Kai to Everyone 09:54 AM

			[13:04] TorstenHahmann: @James: we are working on providing a pypi package for macleod

	== Resources ==		== Resources ==

Forum: /* Attendees */

2023-05-30T19:48:15Z

Attendees

@@ Line 35: / Line 35: @@
 {{:OntologySummit2023/ConferenceCallInformation}}
-== Attendees ==
+* [[AlexanderDiehl|Alexander Diehl]]
 == Discussion ==

Forum: /* Agenda */

2023-04-18T15:42:44Z

Agenda

← Older revision		Revision as of 15:42, 18 April 2023
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	* 12:30 - 12:30 '''[[TorstenHahmann\|Torsten Hahmann]]''' ''Upper Level Domain Models'' [https://bit.ly/3MyXb85 Slides]		* 12:30 - 12:30 '''[[TorstenHahmann\|Torsten Hahmann]]''' ''Upper Level Domain Models'' [https://bit.ly/3MyXb85 Slides]
	* 12:30 - 13:00 Open Discussion		* 12:30 - 13:00 Open Discussion
			* [https://bit.ly/3GVurTf Video Recording]

	== Conference Call Information ==		== Conference Call Information ==

Forum: /* Agenda */

2023-04-12T20:09:18Z

Agenda

← Older revision		Revision as of 20:09, 12 April 2023
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	* 12:00 - 12:10 '''Sierra Moxon''' ''Introduction to LinkML'' [https://bit.ly/41iaCxh Slides]		* 12:00 - 12:10 '''Sierra Moxon''' ''Introduction to LinkML'' [https://bit.ly/41iaCxh Slides]
	* 12:10 - 12:20 '''Asiyah Lin''' ''FOHTI-22 US2TS Summary'' [https://bit.ly/41pGlgb Slides]		* 12:10 - 12:20 '''Asiyah Lin''' ''FOHTI-22 US2TS Summary'' [https://bit.ly/41pGlgb Slides]
	* 12:30 - 12:30 '''[[TorstenHahmann\|Torsten Hahmann]]''' ''Upper Level Domain Models'' [https://bit.ly/~~402H31R~~ Slides]		* 12:30 - 12:30 '''[[TorstenHahmann\|Torsten Hahmann]]''' ''Upper Level Domain Models'' [https://bit.ly/3MyXb85 Slides]
	* 12:30 - 13:00 Open Discussion		* 12:30 - 13:00 Open Discussion

Forum: /* Agenda */

2023-04-12T14:16:57Z

Agenda

← Older revision		Revision as of 14:16, 12 April 2023
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	== Agenda ==		== Agenda ==
	* 12:00 - 12:10 '''Sierra Moxon''' ''Introduction to LinkML'' [https://bit.ly/41iaCxh Slides]		* 12:00 - 12:10 '''Sierra Moxon''' ''Introduction to LinkML'' [https://bit.ly/41iaCxh Slides]
	* 12:10 - 12:20 '''Asiyah Lin''' ''FOHTI-22 US2TS Summary'' [https://bit.ly/41pGlgb ~~Slides][https://bit.ly/402H31R~~ Slides]		* 12:10 - 12:20 '''Asiyah Lin''' ''FOHTI-22 US2TS Summary'' [https://bit.ly/41pGlgb Slides]
	* 12:30 - 12:30 '''[[TorstenHahmann\|Torsten Hahmann]]''' ''Upper Level Domain Models''		* 12:30 - 12:30 '''[[TorstenHahmann\|Torsten Hahmann]]''' ''Upper Level Domain Models'' [https://bit.ly/402H31R Slides]
	* 12:30 - 13:00 Open Discussion		* 12:30 - 13:00 Open Discussion

Forum: /* Agenda */

2023-04-12T14:16:23Z

Agenda

← Older revision		Revision as of 14:16, 12 April 2023
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	== Agenda ==		== Agenda ==
	* 12:00 - 12:10 '''Sierra Moxon''' ''Introduction to LinkML'' [https://bit.ly/41iaCxh Slides]		* 12:00 - 12:10 '''Sierra Moxon''' ''Introduction to LinkML'' [https://bit.ly/41iaCxh Slides]
	* 12:10 - 12:20 '''~~[[TorstenHahmann\|Torsten Hahmann]]~~''' ''~~Upper Level Domain Models~~'' [https://bit.ly/402H31R Slides]		* 12:10 - 12:20 '''Asiyah Lin''' ''FOHTI-22 US2TS Summary'' [https://bit.ly/41pGlgb Slides][https://bit.ly/402H31R Slides]
	* 12:30 - 12:30 '''~~Asiyah Lin~~''' ''~~FOHTI-22 US2TS Summary~~'' ~~[https://bit.ly/41pGlgb Slides]~~		* 12:30 - 12:30 '''[[TorstenHahmann\|Torsten Hahmann]]''' ''Upper Level Domain Models''
	* 12:30 - 13:00 Open Discussion		* 12:30 - 13:00 Open Discussion

Forum: /* Agenda */

2023-04-12T14:14:48Z

Agenda

← Older revision		Revision as of 14:14, 12 April 2023
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	* 12:00 - 12:10 '''Sierra Moxon''' ''Introduction to LinkML'' [https://bit.ly/41iaCxh Slides]		* 12:00 - 12:10 '''Sierra Moxon''' ''Introduction to LinkML'' [https://bit.ly/41iaCxh Slides]
	* 12:10 - 12:20 '''[[TorstenHahmann\|Torsten Hahmann]]''' ''Upper Level Domain Models'' [https://bit.ly/402H31R Slides]		* 12:10 - 12:20 '''[[TorstenHahmann\|Torsten Hahmann]]''' ''Upper Level Domain Models'' [https://bit.ly/402H31R Slides]
	* 12:30 - 12:30 '''~~[[AsiyahLin\|~~Asiyah Lin]]''' ''FOHTI-22 US2TS Summary'' [https://bit.ly/41pGlgb Slides]		* 12:30 - 12:30 '''Asiyah Lin''' ''FOHTI-22 US2TS Summary'' [https://bit.ly/41pGlgb Slides]
	* 12:30 - 13:00 Open Discussion		* 12:30 - 13:00 Open Discussion

← Older revision		Revision as of 20:03, 30 May 2023
Line 36:		Line 36:

	== Attendees ==		== Attendees ==
	* ~~[[AlexanderDiehl\|~~Alexander Diehl]]		* Alexander Diehl
	* [[AlexShkotin\|Alex Shkotin]]		* [[AlexShkotin\|Alex Shkotin]]
	* ~~[[AllenBaron\|~~Allen Baron]]		* Allen Baron
	* ~~[[AsiyahLin\|~~Asiyah Lin]]		* Asiyah Lin
	* ~~[[ChrisKindermann\|~~Chris Kindermann]]		* Chris Kindermann
	* ~~[[ChrisMungall\|~~Chris Mungall]]		* Chris Mungall
	* [[DamionDooley\|Damion Dooley]]		* [[DamionDooley\|Damion Dooley]]
	* [[GaryBergCross\|Gary Berg-Cross]]		* [[GaryBergCross\|Gary Berg-Cross]]
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	* [[JanetSinger\|Janet Singer]]		* [[JanetSinger\|Janet Singer]]
	* [[KenBaclawski\|Ken Baclawski]]		* [[KenBaclawski\|Ken Baclawski]]
	* [[Leigh Carmody~~\|Leigh Carmody]]~~		* Leigh Carmody
	* [[MarkRessler\|Mark Ressler]]		* [[MarkRessler\|Mark Ressler]]
	* [[MikeBennett\|Mike Bennett]]		* [[MikeBennett\|Mike Bennett]]
	* [[Patrick Logan~~\|Patrick Logan]]~~		* Patrick Logan
	* [[RaviSharma\|Ravi Sharma]]		* [[RaviSharma\|Ravi Sharma]]
	* ~~[[RhiannonCameron\|~~Rhiannon Cameron]]		* Rhiannon Cameron
	* [[RussellReinsch\|Russell Reinsch]]		* [[RussellReinsch\|Russell Reinsch]]
	* ~~[[SabrinaToro\|~~Sabrina Toro]]		* Sabrina Toro
	* ~~[[SusanBello\|~~Susan Bello]]		* Susan Bello
	* [[TorstenHahmann\|Torsten Hahmann]]		* [[TorstenHahmann\|Torsten Hahmann]]