View source for ConferenceCall 2023 01 18

{| class="wikitable" style="float:right; margin-left: 10px;" border="1" cellpadding="10"
|-
! scope="row" | Session
| [[session::Launch]]
|-
! scope="row" | Duration
| [[duration::1 hour]]
|-
! scope="row" rowspan="3" | Date/Time
| [[has date::18 Jan 2023 17:00 GMT]]
|-
| 9:00am PST/12:00pm EST
|-
| 5:00pm GMT/6:00pm CST
|-
! scope="row" | Convener
| [[convener::KenBaclawski|Ken Baclawski]]
|}

= [[OntologySummit2023|Ontology Summit 2023]] 

== Helping scientific researchers make better use of ontologies: Tools, Methods and Best Practices ==


{{border|{{border|<center>In memoriam</center><center>'''[[PeterYim|Peter Yim]]'''</center><center>1951-2022</center>Our friend and Ontolog Forum founder [[PeterYim|Peter P. Yim]] has passed away. It is very sad news to all of us who worked with him, and a great loss to the community he founded and nurtured for many years. He will be missed. This Ontology Summit is dedicated to the memory of Peter.|width=5px|color=white}}|width=5px|color=black|display=block}}

== Agenda ==
* 12:00 - 12:05 '''[[KenBaclawski|Ken Baclawski]]''' Tribute to [[PeterYim|Peter Yim]]
* 12:05 - 12:10 '''[[KenBaclawski|Ken Baclawski]]''' Summit Kickoff and Introduction of the Summit Co-Chairs
* 12:10 - 12:20 '''[[GaryBergCross|Gary Berg-Cross]]''' and '''[[JamesOverton|James Overton]]''' ''Summit Vision'' [https://bit.ly/3HeJ1WI Slides]
* 12:20 - 12:40 '''[[GaryBergCross|Gary Berg-Cross]]''' and '''[[JamesOverton|James Overton]] ''Summit Schedule''
* 12:40 - 12:50 '''Cogan Matthew Shimizu/Pascal Hitzler''' ''Methods and Tools'' [https://bit.ly/3ZJpmW0 Slides]
* 12:50 - 13:00 '''[[GaryBergCross|Gary Berg-Cross]]''' Conclusion and Discussion
* [https://bit.ly/3WkN2Nq Video Recording]

== Conference Call Information ==
* Date: '''Wednesday, 18 Jan 2023''' 
* Start Time: 9:00am PST / 12:00pm EST / 6:00pm CST / 5:00pm GMT / 1700 UTC 
** ref: [http://www.timeanddate.com/worldclock/fixedtime.html?month=01&day=18&year=2023&hour=12&min=00&sec=0&p1=179 World Clock] 
* Expected Call Duration: 1 hour
{{:OntologySummit2023/ConferenceCallInformation}}

== Attendees ==
* [[AdamShepherd|Adam Shepherd]]
* [[AlexShkotin|Alex Shkotin]]
* [[AlexanderDiehl|Alexander Diehl]]
* [[AllenBaron|Allen Baron]]
* [[AndreaWesterinen|Andrea Westerinen]]
* [[AnitaCaron|Anita Caron]]
* [[BartGajderowicz|Bart Gajderowicz]]
* [[CharlieHoyt|Charlie Hoyt]]
* [[ChristopherLozinski|Christopher Lozinski]]
* [[ClaudiaSanchezBeatoJohnson|Claudia Sanchez-Beato Johnson]]
* [[CoganShimizu|Cogan Shimizu]]
* [[DamienGoutteGattat|Damien Goutte-Gattat]]
* [[DamionDooley|Damion Dooley]]
* [[DougHolmes|Doug Holmes]]
* [[ElizabethFlorescu|Elizabeth Florescu]]
* [[GaryBergCross|Gary Berg-Cross]]
* [[JamesOverton|James A. Overton]]
* [[JenniferGiron|Jennifer C. Gir&oacute;n]]
* [[JieZheng|Jie Zheng]]
* [[JimBalholt|Jim Balholt]]
* [[JoanneLuciano|Joanne Luciano]]
* Kai
* [[KenBaclawski|Ken Baclawski]]
* [[LynnSchriml|Lynn Schriml]]
* [[MarciaZeng|Marcia Zeng]]
* [[MarkFox|Mark Fox]]
* [[MarkUnderwood|Mark Underwood]]
* [[MikeBennett|Mike Bennett]]
* [[MikeRiben|Mike Riben]]
* [[NancyWiegand|Nancy Wiegand]]
* [[NicoMatentzoglu|Nico Matentzoglu]]
* [[PhilipStroemert|Philip Str&ouml;mert]]
* [[RandiVita|Randi Vita]]
* [[RaviSharma|Ravi Sharma]]
* [[RhiannonCameron|Rhiannon Cameron]]
* [[RobertRovetto|Robert Rovetto]]
* [[SabriaToro|Sabria Toro]]
* [[SamsonTu|Samson Tu]]
* [[SierraMoxon|Sierra Moxon]]
* [[SteveRay|Steve Ray]]
* [[SusanBello|Susan Bello]]
* [[ThomasExner|Thomas Exner]]
* [[ToddSchneider|Todd Schneider]]
* [[TomWalpole|Tom Walpole]]

== Discussion ==
[12:11] RaviSharma: We start with condolences for Peter Yim who founded Ontolog Forum and ran it for several years. Welcome to the Summit 2023

[12:15] RaviSharma: we are excited to see 43 participants in the opening session and welcome everyone.

[12:24] Nico Matentzoglu: OBO Academy: https://oboacademy.github.io/obook

OBO Tools Workshop recording at ICBO 2022: youtube.com/watch?v=ayHsUkC4nZo

[12:24] UnCensoredNews.US I am new to ontologies.  I am interested in climate change ontologies.

[12:26] RaviSharma: welcome, we did cover some of it in last year summit, please review some of the sessions on environmental disasters and recordings and slides.

[12:29] Christopher Lozinski: Are OBO ontologies just trees?

[12:30] Christopher Lozinski: What language is OBO written in?  What database?

[12:30] Nico Matentzoglu: At OBO there are no climate change ontologies per se, but we have some very active people in COP27 and other such conferences. For example, the godfather of ENVO (https://github.com/EnvironmentOntology/envo), Pier Luigi Buttigieg, is very active on deep water related efforts related to climate.

[12:31] Nico Matentzoglu: Climate change is so complex - basically all ontologies are relevant to it I think

[12:31] Cogan Shimizu: You might also reach out to Ellie Young, who is focused on this space, from a community driven standpoint.

[12:32] Kai: The ESIP community as well Earth Science Information Partnership

[12:32] Alex Shkotin: soaphub is better as it will be on the session page later.

[12:33] Alex Shkotin: http://webconf.soaphub.org/conf/room/ontology_summit_2023

[12:36] Nico Matentzoglu: For those of you familiar with the OWL API, ROBOT can be seen in many ways as a CLI for OWL API. There is nothing really OBO-esque about it, it can be used for any OWL ontology parseable with the OWL API.

[12:37] Lynn Schriml: Check out ROBOT at http://robot.obolibrary.org

[12:37] RaviSharma: Q for James about Relationship Ontology, is there an agreed irreducible set of relationships or these have not been analyzed yet?

[12:38] RaviSharma: from other chat zoom

[12:38] Alex Shkotin: What about Jena?

[12:38] Nico Matentzoglu: Yes, in a very limited way as well. ODK includes riot, but in ROBOT we use Jena as a SPARQL endpoint

[12:39] Alex Shkotin: OK

[12:40] James Overton: Yes: ROBOT builds on both OWLAPI and Apache Jena.

[12:40] Susan Bello: OBO foundry home page https://obofoundry.org/

[12:40] Mark Underwood: Public Service Announcement: A former Ontolog participant James Schoening is chairing two IEEE Standards WGs "P3195 Requirements for a Mid-Level Ontology and Extensions" and P3195.1 Common Core Ontology (CCO) (Conforms to ISO/IEC-JTC1-21838-2 Basic Formal Ontology See https://sagroups.ieee.org/oswg/  This is open to the public; IEEE membership helpful but not required

[12:41] Nico Matentzoglu: Cogan, we can present DOS-DP which is the design pattern system we use in OBO if you are interested/there is time

[12:42] Nico Matentzoglu: Ahhhhh Haha I JUST organised a great Seminar on Wikidata with two excellent Wikidata experts… on the 21st March!

[12:42] James A. Overton: Replying to Christopher Lozinski: OBO projects use OWL (Web Ontology Language), and so they are more than just tree.

[12:43] Nico Matentzoglu: oops

[12:43] Cogan Shimizu: yes, dos-dp patterns have been on my radar for some time, but I haven't really had a chance to carve out bandwidth to discuss the interoperability of our paradigms. Perhaps this is a good kick -- we can possibly perhaps have a call this month?

[12:43] Nico Matentzoglu: I will follow up with you on slack

[12:43] Cogan Shimizu: possibly perhaps /facepalm

[12:44] James A. Overton: Replying to RaviSharma: RO may not be as formal as you are suggesting. The core RO relations owe a lot to older versions of BFO, but have not followed recent changes to relations in ISO BFO 2020.

[12:48] Mark Underwood: @Nico Can you post a link to the March Wikipdata meeting you alluded to?  Thx

[12:48] Nico Matentzoglu: (To whoever is organising the Wikidata session: I am happy to try and redirect our Wikidata seminar under the wings of ontosummit, but I need to talk to the speakers first)

[12:48] ToddSchneider: Where/when does ontological analysis come in?

Competency question by themselves are not sufficient. They are only a subset of requirements for development of an ontology.

[12:54] James A. Overton: Nico: I'll reach out to you and Gary about the Wikidata session.

[10:01] James Overton: Thanks for coming to our kickoff session everyone! Looking forward to seeing you next week!

[13:02] Joanne Luciano: It's so wonderful to see everyone and honor Peter. I have to leave for another meeting. Happy New Year -and all the best in good health! Take care, bye for now.

[13:04] RaviSharma: Q for Corbin have the geolocation accuracies or relevance improved with these design patterns

[13:06] RaviSharma: Robert Rovetto commented among others education and ISO and Cogan's work.

== Resources ==
* [https://bit.ly/3HeJ1WI Gary Berg-Cross and James Overton Slides]
* [https://bit.ly/3ZJpmW0 Cogan Shimizu Slides]
* [https://bit.ly/3WkN2Nq Video Recording]

== Previous Meetings ==
{{#ask: [[Category:OntologySummit2023]] [[Category:Icom_conf_Conference]] [[<<ConferenceCall_2023_01_18]]
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== Next Meetings ==
{{#ask: [[Category:OntologySummit2023]] [[Category:Icom_conf_Conference]] [[>>ConferenceCall_2023_01_18]]
        |?|?Session|mainlabel=-|order=asc|limit=3}}

[[Category:OntologySummit2023]]
[[Category:Icom_conf_Conference]]
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