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Session Planning
Duration 1 hour
Date/Time 12 Oct 2022 16:00 GMT
9:00am PDT/12:00pm EDT
5:00pm BST/6:00pm CEST
Convener Ken Baclawski

Ontology Summit 2023 Planning

Helping scientific researchers make better use of ontologies

Agenda

Conference Call Information

  • Date: Wednesday, 12 Oct 2022
  • Start Time: 9:00am PDT / 12:00pm EDT / 6:00pm CEST / 5:00pm BST / 1600 UTC
  • Expected Call Duration: 1 hour
  • Video Conference URL
    • Conference ID: 837 8041 8377
    • Passcode: 323309
  • Chat Room

The unabbreviated URLs are:

Attendees

[12:14] Gary BC: A theme for organizing the 2023 Ontology Summit... How to "help scientists make better use of ontologies" a goal set by James Overton who is will be be co-organizer with me.

  • The Where, Who, and How details would be a good topic for the 2023 Ontology Summit.
  • 40% of this could come from the BioMed domain and the OboFoundry and the another 40% from other domains and efforts with the remaining 20% devoted to bringing this together.

[12:15] Gary BC: Talks on Ontology Tools and Workflow management (FAIR ontology support)

  • Ontology Development Kit (ODK): A toolkit for initializing a new ontology repository. The template includes a structured directory, a Makefile with automated release workflows, continuous integration testing, and full documentation.
  • ROBOT: A command line tool to automate ontology workflows. It includes commands that can be used manually or integrated in automated processes to develop and release ontologies.

[12:16] Gary BC: Example of talk topics: James Overton overview

  • COB the use of a high-level, core reference model (Chris Mungall)
  • Ontology Development Kit (ODK): A toolkit for initializing a new ontology repository. The template includes a structured directory, a Makefile with automated release workflows, continuous integration testing, and full documentation.
  • ROBOT: A command line tool to automate ontology workflows. It includes commands that can be used manually or integrated in automated processes to develop and release ontologies.
  • Onto-Animals: Tools to extract external ontology terms, compare ontologies, edit ontology terms, query and visualize ontologies, and more.
  • VOCOL: An integrated environment for collaborative vocabulary development
  • Karma Data Integration: A data integration tool
  • Ontofox: An ontology term and relation extraction and reuse tool
  • Ubergraph: A sparql endpoint with many OBO ontologies loaded and pre-reasoned with simple triples materialized
    • OBO Dashboard: An assesment of OBO Foundry ontologies conformance to OBO Foundry principles
    • OBO Community Health Report: A self-updating assessment of the quality of metadata, responsiveness of the maintainers, and the overall community engagement for each OBO Foundry ontology.

[12:16] Gary BC: have to go. Let me know what else might be discussed about this.

[12:27] Ken Baclawski: We had a nice discussion. The planning process will continue next week at the same time and connection URL.

[12:28] Ken Baclawski: Meeting is adjourned.

[12:32] Gary BC: OK WE can follow up as needed. Maybe a discussion on the Forum???

Resources

Previous Meetings

Next Meetings

 Session
ConferenceCall 2022 10 19Planning
ConferenceCall 2022 10 26Planning
ConferenceCall 2022 11 09Planning
... further results