Ontolog Forum
OpenOntologyRepository: OOR Team Conference Call - Tue 2012_02_07
This is a regular OOR Team meeting. ... please refer to proceedings from the last team meeting at OOR/ConferenceCall_2012_01_10
Conference Call Details
- Date: Tuesday, 7-Feb-2012
- Start Time: 8:30am PST / 11:30am EST / 5:30pm CET / 16:30 UTC
- ref: World Clock
- Expected Call Duration: 1.0~1.5 hours
- Dial-in:
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- In-session chat-room url: http://webconf.soaphub.org/conf/room/oor_20120207
- RSVP to peter.yim@cim3.com appreciated, ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.)
- This session, like all other Ontolog events, is open to the public. Information relating to this session is shared on this wiki page: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2012_02_07
- Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under our prevailing open IPR policy.
Attendees
- Attended:
- Ken Baclawski (chair)
- Peter P. Yim (scribe)
- Todd Schneider
- Michael Grüninger
- Brian Davis
- Expecting:
-
- ... if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation. ...
- Regrets:
Agenda Ideas
please insert any additional items below (along with your name for follow-up purposes)
- postmortem of the last couple of workshops (Architecture-API-X & Metadata-V)
- OOR: sandbox, devbox, socop-instance status update
- planning and coordination on upcoming OOR events
- doing something at Ontology Summit 2012
- Member activities updates
- action planning for "content drive" (getting people to upload ontologies)
- Getting us to a stage when we can run a OOR-production box
- ...
Agenda & Proceedings
- audio recording of the session [ 1:08:20 ; mp3 ; 7.82 MB ]
- chat-transcript of this session
1. Meeting called to order:
- Ken Baclawski takes the chair and welcome everyone
- review and adopt agenda
- Peter P. Yim volunteered to take notes
2. Roll Call:
- see above
- welcome and intro of new member(s) (if applicable)
3. Status Review and Discussion:
- Review and update our "Most Critical Task(s) At Hand" list ...(we will skip this stock agenda item at today's call.)
4. Key items for review and discussion today
- postmortem of the last couple of workshops (Metadata-V & Architecture-API-X) ... ref.
- OOR-Metadata-V - OOR/ConferenceCall_2012_01_17
- Michael: ORWG presentation and discussion, mainly OMV & CTS2 ... look toward more discussion at a next session
- Brian: as of this Thu (Feb-9) ORWG is suspending and wrapping into a larger project that will look into the bigger picture of standards (cf. DISR - Defense Information Standard Repository; NCRI (UK's) work; and "Cancer InfoMatrix" - http://www.ncri-onix.org.uk/portal/#S24) ... Brian and Sherri are still going to be involved
- OOR-Architecture-API-X - OOR/ConferenceCall_2012_01_31
- Todd walked us through his reverse-engineered architecture of the Nov-2011 version of BioPortal
- 3 coordinated and branched development (tab-based) effort are starting KenBaclawski+ToddSchneider (workflow & gatekeeping), Mike Dean (federation) & Michael Grüninger (metadata)
- Ken: still need some clarification from Paul Alexander on getting started on the development of a tab
- Michael will look into java code generation from OMV
- OOR-Metadata-V - OOR/ConferenceCall_2012_01_17
- OOR: sandbox, devbox, socop-instance status update
- ref. http://oor-03.cim3.net is the current OOR_SandBox
- <oor-04.cim3.net> is up (still on CANTOR) and accessible as: http://socop.oor.net
- Peter: WITTGENSTEIN is not up yet, plans updated, to use this box for testing (our the next virtualization strategy based on) [[CentOS]]-KVM
- customization: Mike & Ken has customized both oor-03 & oor-04 - ref. http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR_SandBox_Customization#nid30R7
- logo color still doesn't look quite right - see: http://oor-03.cim3.net (current) vs. http://oor-03.cim3.net (socop) vs. http://oor-01.cim3.net (old v2.6) vs. http://bioportal.bioontology.org/ (current BioPortal)
- re: "Feedback" to support@oor.net - which now forwards to: peter.yim@cim3.com, yimpp1@yahoo.com, mdean@bbn.com, kenb@ccs.neu.edu, tejas@tejasparikh.com, oor-users@ontolog.cim3.net
- PPY: glad I have not yet allowed the posting to <oor-users@ontolog.cim3.net> and its archives ... because to date, all messages received (just a few, less than 10) were all spam messages
- see also: comment from Tejas - he has re-enabled reCaptcha on socop.oor.net (oor-04.cim3.net) - http://ontolog.cim3.net/forum/oor-users/2012-02/msg00000.html
- need better means to deal with it ... (discuss)
- also, since we are running multiple instances, we need some means to differentiate, e.g. support questions from the sandbox, socop, or dev instance. ... [action: ...]
- PPY: glad I have not yet allowed the posting to <oor-users@ontolog.cim3.net> and its archives ... because to date, all messages received (just a few, less than 10) were all spam messages
- planning and coordination on upcoming OOR events
- re-scheduling metadata (VI?) session: with Mike Bennett on financial metadata - some time in Mar-2012 (either Mar-13) - [MichaelGruninger]
- re-scheduling Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-3: on "ISO/IEC 24707 Common Logic and IKL" [MichaelGruninger & JohnBateman] ... will discuss off-line and revert (as OntoIOp is also meeting every other week now)
- OOR Architecture & API Workshop-XII now scheduled for (either Mar-20) - Ken & Todd
- next Content workshop ...?
- ... lining up more?
- no meeting on Feb-14 & Feb-28
- we meet on Feb-21 about coding
- Mar-6 team meeting
- doing something at OntologySummit2012
- Todd will champion OOR by injecting it into any track where it makes sense ... also by way of NCOIC involvement
- Mike will support (technically, especially by way of the socop-oor instance) Nancy and Gary in the collaborative SOCoP-INTEROP / Summit workshop that Nancy is spearheading
- Ken will work on one presentation (on behalf of OOR), which Todd and Peter will try to slot into one of the sessions - possibility: "OOR and webservices"
- ... think of something we can engage Duane Nickull on
- Member activities updates - ref. below ... (item skipped; discussion deferred)
- action planning for "content drive" ... (item skipped; discussion deferred) (getting people to upload ontologies)
- Getting us to a stage when we can run a OOR-production box ... (item skipped; discussion deferred)
... Notes below are from previous meeting(s), and will be updated as this meeting progresses.
- planning and coordination on upcoming OOR events
- Getting us to a stage when we can run a OOR-production box ...(we will skip this stock agenda item at today's call.)
- action planning for facilitating code contribution (organizing ourselves so various sub-teams can actually get to work on coding) ...(we will skip this stock agenda item at today's call.)
- action planning for "soliciting" content (getting people to upload ontologies) ...(we will skip this stock agenda item at today's call.)
- Getting us to a stage when members can contribute code ... how, ETA?
- (discussion 2011.05.06):
- an adopted Architecture & API is definitely crucial, but that's not all
- All team members are encouraged to mull over how we can get to that state effectively
- in particular ... how do we make this a "successful" community-driven, open source project!?
- (discussion 2011.06.03) ...
- (discussion 2011.05.06):
- code development on an Eclipse IDE for all?
- Code repository - considering "git" or github?
- Getting us to a stage when we can run a OOR-production box ... what's still needed, ETA?
- ...
Member activities updates:
- Review: members and OOR-related activities (2012.02.07)
- OOR-sandbox status
- code repository status
- NCBO
- NEU
- Raytheon-BBN
- Bremen
- UToronto
- Ryerson
- Mathet
- SOCoP_INTEROP
- DataONE
- NeOn (KMi and STL)
- ONKI
- KBSI
- MMI
- Use Cases
- Architecture
- API
- Gatekeeping
- production OOR instance
- SIO
- Funding
- ICOM / DERI
Action planning for "soliciting" content (getting people to upload ontologies)
5. Funding progress:
6. Any Other Business:
7. Action items:
8. Schedule Next Meeting & Adjourn:
- Next Meetings:
- no OOR meetings on Feb-14 & Feb-28
- we meet on Feb-21 about coding, and check progress on getting implementing our first tabs
- 2012_03_06 - next Regular OOR Team meeting - first Tuesday of the month - OOR/ConferenceCall_2012_03_06
- next Metadata workshop (VI) on Tue 2012.03.13
- next Architecture API workshop (XI) on Tue 2012.03.20
- Call adjourned at: 9:39 am PST
--
notes taken by: Peter P. Yim / 2012.02.07-11:45am PST
All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.
Resources
- homepage - OpenOntologyRepository - http://OpenOntologyRepository.org
- OOR Charter - To promote the global use and sharing of ontologies by: 1. establishing a hosted registry-repository; 2. enabling and facilitating open, federated, collaborative ontology repositories; 3. establishing best practices for expressing interoperable ontology and taxonomy work in registry-repositories.
- "Ontology Repository" Definition - "An ontology repository is a facility where ontologies and related information artifacts can be stored, retrieved and managed"
- Team mailing list:
- OOR-Team discussion: [ oor-forum ] message archives - http://ontolog.cim3.net/forum/oor-forum/
- OOR-Users discussion and support: [ oor-users ] message archives - http://ontolog.cim3.net/forum/oor-users/
- Developers mailing list: [ oor-dev ] message archives - http://ontolog.cim3.net/forum/oor-dev/
- proceedings of our previous meetings, panel discussions and workshops
- the Joint OOR-OntologySummit2008 Panel Discussions:
- 2008_02_28 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Ontology Registry and Repository Technology & Infrastructure Landscape" - Co-chairs: Leo Obrst & Frank Olken; Panelists: Bruce Bargmeyer, Mike Dean, Mark Musen, Farrukh Najmi & Peter P. Yim - ConferenceCall_2008_02_28
- 2008_03_27 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-1" - Chair: Leo Obrst & Fabian Neuhaus; Panelists: William Bug, Evan Wallace, JohnLMcCarthy, Ken Baclawski, Peter Benson & Rex Brooks - ConferenceCall_2008_03_27
- 2008_04_03 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-2" - Chair: Leo Obrst & Fabian Neuhaus; Panelists: Doug Lenat, Deke Smith, Marcia Zeng, Denise Bedford, Pat Hayes, Mala Mehrotra & Rob Raskin - ConferenceCall_2008_04_03
- 2008_04_10 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Developing an Ontology of Ontologies for OOR" - Co-chairs: Barry Smith & Michael Grüninger; Panelists: Michael Grüninger, Peter Haase, Natasha Noy & Elisa Kendall - ConferenceCall_2008_04_10
- the OOR Development panel sessions:
- 2008_08_22 - Friday: OOR Panel Discussion: "Getting OOR Development Off the Ground: Identifying Synergies & Gaps" (Take-1) - Chair: Leo Obrst; Panelists: Mike Dean, Mark Musen, Li Ding, Bruce Bargmeyer & Bill Andersen - ConferenceCall_2008_08_22
- 2009_02_19 - Thursday: Joint Ontolog-OOR Panel Discussion: "Getting OOR Development Off the Ground (Take-2): the work begins" - Chair: Todd Schneider; Panelists: Mark Musen, Natasha Noy, Mike Dean, Paul Buitelaar / Andreas Harth, Mathieu Daquin, Ken Baclawski, Michael Grüninger - ConferenceCall_2009_02_19
- 2009_07_16 - Thursday: Joint Ontolog-OOR Panel Discussion: "Integrated tools for ontology development and management: A field guide to the Stanford technology" - Chair: Mark Musen - Panelists: Tania Tudorache, Tim Redmond, Natasha Noy - ConferenceCall_2009_07_16
- 2009_07_30 - Thursday: Joint Ontolog-OOR Panel Discussion: "BioPortal and related Ontology Repository Implementations and Development" (Take-3) - Chair: Natasha Noy - Panelists: Carlos Rueda, Paul Alexander, John Graybeal, Mike Dean, StephenGranite, AlexGarcia, Ken Baclawski - ConferenceCall_2009_07_30
- 2010_02_19 - Friday: OOR Panel Discussion: "Coordinating our Open Ontology Repository Software Development" - Chair: Mike Dean - Panelists: Jim Chatigny, Michael Grüninger, Ken Baclawski, Natasha Noy - OOR/ConferenceCall_2010_02_19
- 2010_04_01 - Thursday: Joint OOR-Ontolog Panel Session: "OOR Use Cases - Take-3" - Chair: Ken Baclawski & Todd Schneider - Panelists: Todd Schneider, Matthew Hettinger, Ken Baclawski and Máximo Gurméndez - ConferenceCall_2010_04_01
- 2010_09_10 - Friday: Joint SIO-OOR-Ontolog Panel Discussion: "Common Logic (CL) Support for OOR" - Chair: John F. Sowa - Panelists: JohnBateman-TillMossakowski, Michael Grüninger, Cameron Ross, Adam Pease, Pat Hayes - ConferenceCall_2010_09_10
- 2010_09_17 - Friday: OOR Panel Discussion - "Getting OOR Development Going - Take-IV" Workshop - Co-chairs: Todd Schneider & Michael Grüninger - Panelists: Todd Schneider, Mike Dean, Natasha Noy, Immanuel Normann, Ken Baclawski, Michael Grüninger - OOR/ConferenceCall_2010_09_17
-
- 2010_10_15 - Friday: OOR Project Team Member Conference Call - discussion on the (post-BioPortal fork) OOR Architecture and API - OOR/ConferenceCall_2010_10_15
- 2011_09_13 - Tuesday: Joint NCBO-OOR Team Meeting - "Kicking-off the Next Phase of Collaboration" - Co-chairs: Ray Fergerson & Peter P. Yim - OOR/ConferenceCall_2011_09_13
- 2011_11_29 - Tuesday: Joint NCBO-OOR Session - "OOR Architecture & API Workshop-IX: BioPortal & OOR Synergies" - Co-chairs: Ken Baclawski & Todd Schneider - Discussant: Ray Fergerson - OOR/ConferenceCall_2011_11_29
-
- 2010_11_19 - Friday: OOR Panel Discussion - "(Post-BioPortal fork) OOR Architecture and API - Take-II" - Co-chairs: Ken Baclawski & Michael Grüninger - Panelists: KenBaclawski+ToddSchneider, AldoGangemi+AlessandroAdamou, JouniTuominen+KimViljanen, Eric Chan - OOR/ConferenceCall_2010_11_19
- 2011_03_04 - Friday: OOR "Architecture & API Specification Development Workshop-I" - Co-chairs: Ken Baclawski & Todd Schneider - OOR/ConferenceCall_2011_03_04
- 2011_03_11 - Friday: OOR - "Architecture & API Specification Development Workshop-II" - Co-chairs: Ken Baclawski & Todd Schneider - OOR/ConferenceCall_2011_03_11
- 2011_03_25 - Friday: OOR - "Architecture & API Specification Development Workshop-III" - Co-chairs: Ken Baclawski & Todd Schneider - OOR/ConferenceCall_2011_03_25
- 2011_04_22 - Friday: OOR - "Architecture & API Specification Development Workshop-IV" - Co-chairs: Ken Baclawski & Todd Schneider - OOR/ConferenceCall_2011_04_22
- 2011_05_20 - Friday: OOR - "Architecture & API Specification Development Workshop-V" - Co-chairs: Ken Baclawski & Todd Schneider - OOR/ConferenceCall_2011_05_20
- 2011_06_17 - Friday: OOR - "Architecture & API Specification Development Workshop-VI" - Co-chairs: Ken Baclawski & Todd Schneider - OOR/ConferenceCall_2011_06_17
- 2011_09_20 - Tuesday: OOR - "Architecture & API Specification Development Workshop-VII" - Co-chairs: Ken Baclawski & Todd Schneider - OOR/ConferenceCall_2011_09_20
- 2011_10_11 - Tuesday: OOR - "Architecture & API Specification Development Workshop-VIII" - Co-chairs: Ken Baclawski & Todd Schneider - OOR/ConferenceCall_2011_10_11
- 2011_11_29 - Tuesday: Joint NCBO-OOR Session - "OOR Architecture & API Workshop-IX: BioPortal & OOR Synergies" - Co-chairs: Ken Baclawski & Todd Schneider - Discussant: Ray Fergerson - OOR/ConferenceCall_2011_11_29
- 2012_01_31 - Tuesday: OOR Architecture & API Workshop-X - Co-chairs: Ken Baclawski & Todd Schneider - OOR/ConferenceCall_2012_01_31
-
- 2011_11_08 - Tuesday: "Getting OOR Development Going - Take-V" Workshop - Chair: Mike Dean - "Getting OOR Development going, on Eclipse?" - OOR/ConferenceCall_2011_11_08
- 2011_11_22 - Tuesday: "Getting OOR Development Going - Take-VI" Workshop - Chair: Mike Dean - OOR/ConferenceCall_2011_11_22
-
- 2011_03_18 - Friday: OOR Metadata Workshop-I - Chair: Michael Grüninger - OOR/ConferenceCall_2011_03_18
- 2011_05_13 - Friday: OOR Metadata Workshop-II - Chair: Michael Grüninger - OOR/ConferenceCall_2011_05_13
- 2011_05_27 - Friday: OOR Metadata Workshop-III - Chair: Michael Grüninger - OOR/ConferenceCall_2011_05_27
- 2011_10_18 - Friday: OOR Metadata Workshop-IV - Chair: Michael Grüninger - OOR/ConferenceCall_2011_10_18
- 2012_01_17 - Tuesday: OOR Metadata Workshop-V - "OOR Metadata Workshop-V: Crosswalk between OMV & CTS2, and other relevant work by the NIH/NCI-ORWG" Chair: Michael Grüninger - Panelists: Harold Solbrig, SherriDeCoronado, Brian Davis - OOR/ConferenceCall_2012_01_17
- the OOR-IPR mini-series:
- 2010_09_09 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-1: an exposition on relevant IPR regimes - Keynote speaker: George Strawn - Chair: Peter P. Yim - Panelists: JamieClark, John Wilbanks, Bruce Perens - ConferenceCall_2010_09_09
- 2010_09_16 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-2: what are the IPR issues relating to open ontology repositories (and ontologies in general)? - Chair: Mark Musen - Panelists: Cameron Ross, Alan Rector, John F. Sowa, Bruce Perens, John Wilbanks, Peter P. Yim - ConferenceCall_2010_09_16
- 2010_09_30 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-3: discussion and consensus on licensing arrangements for the OOR Initiative, and positions we might take on related IPR issues - chair: Leo Obrst - Panelists: Peter P. Yim, Mike Dean, Bruce Perens, JamieClark - ConferenceCall_2010_09_30
- the Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series:
- 2011_10_20 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-1: Introducing the ISO NP 17347 "Ontology Integration and Interoperability (OntoIOp)" Standardization Effort - Co-chairs: John Bateman & Michael Grüninger - ConferenceCall_2011_10_20
- 2011_11_03 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-2: Invited Speaker: Elisa Kendall on "Ontology-Related Metadata Standards" - Co-chairs: Michael Grüninger & John Bateman - ConferenceCall_2011_11_03
- 2011_12_15 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-3: "ISO/IEC 24707 Common Logic and IKL" - Co-chairs: Michael Grüninger & John Bateman - ConferenceCall_2011_12_15
- OntologySummit2008 homepage
- OntologySummit2008_Communique
- OntologySummit2008/FaceToFaceAgenda & Proceedings
- The OOR Project Presentation (delivered at the Ontology Summit 2008 face-to-face workshop)
- [ ontology-summit ] discussion archives - http://ontolog.cim3.net/forum/ontology-summit/2008-01/ (~5 months exchanges starting from Jan-2008)
- Our key content pages:
- OpenOntologyRepository_Scope
- OpenOntologyRepository_Organization
- OpenOntologyRepository_Process
- OpenOntologyRepository_Policy
- OpenOntologyRepository_IPR
- OpenOntologyRepository_Requirement
- OpenOntologyRepository_UseCases
- OpenOntologyRepository_Architecture
- OpenOntologyRepository_Approach
- OpenOntologyRepository_Roadmap
- OpenOntologyRepository_Plan
- OpenOntologyRepository_Funding
- OpenOntologyRepository_ResearchIssues
- OpenOntologyRepository_ResearchActivity
- OpenOntologyRepository_Development
- OpenOntologyRepository_Metadata
- OOR/ActiveMemberContribution
- OOR Project site at SemWebCentral - http://oor.semwebcentral.org
- Public instances of OOR - http://sandbox.oor.net/ontologies (previously http://oor-01.cim3.net/ontologies) ... we are in process to standing up:
- OOR_SandBox - http://oor-03.cim3.net (online now!) - ( http://sandbox.oor.net/ - later)
- OOR_DevBox - http://oor-01.cim3.net - ( http://dev.oor.net/ - v2.6 - now obsolete)
- OOR_DevBox - ( http://oor-05.cim3.net - ( http://dev.oor.net/ - coming!))
- SOCoP_OOR - http://oor-04.cim3.net - http://socop.oor.net/ - (online now!)
- NCBO - BioPortal
- BioPortal's [bioontology-support] mailing list - see: https://mailman.stanford.edu/mailman/listinfo/bioontology-support
- NCBO-OOR development documentation - http://www.bioontology.org/wiki/index.php/NCBO-OOR_Development