Actions

OpenOntologyRepository: Difference between revisions

Ontolog Forum

No edit summary
No edit summary
 
Line 7: Line 7:
= Open Ontology Repository (OOR) Initiative - Home Page  =
= Open Ontology Repository (OOR) Initiative - Home Page  =


Goto an [http://oor.net/index1.html OOR instance]: '''[ [http://sandbox.oor.net OOR-sandbox] ] . [ [http://socop.oor.net SOCoP] ] . [ [http://colore.oor.net COLORE] ] . [ [http://ontohub.oor.net Ontohub] ] . [ [http://mmisw.oor.net MMI-ORR] ] . [ [http://bioportal.bioontology.org/ BioPortal] ] . [ [http://sigma.oor.net Sigma-KEE] ]'''
[http://bioportal.bioontology.org/ BioPortal]


'''The [[OpenOntologyRepository|OOR Mission]]'''  
'''The [[OpenOntologyRepository|OOR Mission]]'''  
Line 39: Line 39:
=== What's New  ===
=== What's New  ===


* ''next meeting:'' 2014_07_29 - Tuesday: OOR team (planning and admin) meeting: Consolidating the IAOA & OOR Working Relationship - Co-chairs: [[MichaelGruninger|Michael Grüninger]] & [[User:KennethBaclawski|Ken Baclawski]] - ref. details at: http://ontolog-02.cim3.net/wiki/OOR_Conference_2014_07_29   
* ''next meeting:'' 2014_07_29 - Tuesday: OOR team (planning and admin) meeting: Consolidating the IAOA & OOR Working Relationship - Co-chairs: [[MichaelGruninger|Michael Grüninger]] & [[User:KennethBaclawski|Ken Baclawski]] - ref. details at: [[OOR_Conference_2014_07_29]]


. . .  
. . .  


* 2014_07_22 - Tuesday: OOR API Workshop: "the [[OntoHub]] API" - Chair: [[TillMossakowski|Till Mossakowski]], with presentation by [[TimReddehase|Tim Reddehase]] (from the Ontohub team) - ref. details at: http://ontolog-02.cim3.net/wiki/OOR_Conference_2014_07_22  
* 2014_07_22 - Tuesday: OOR API Workshop: "the [[OntoHub]] API" - Chair: [[TillMossakowski|Till Mossakowski]], with presentation by [[TimReddehase|Tim Reddehase]] (from the Ontohub team) - ref. details at: [[OOR_Conference_2014_07_22]]


* '''2014_07_15 - Tuesday: OOR team Meeting: OOR Moving Forward - Co-chairs: [[MikeDean|Mike Dean]] & [[PeterYim|Peter P. Yim]] - ref. details at: [[OOR/ConferenceCall_2014_07_15]]'''  
* '''2014_07_15 - Tuesday: OOR team Meeting: OOR Moving Forward - Co-chairs: [[MikeDean|Mike Dean]] & [[PeterYim|Peter P. Yim]] - ref. details at: [[OOR/ConferenceCall_2014_07_15]]'''  
Line 140: Line 140:
* 2011_11_22 - Tuesday: "Getting OOR Development Going - Take-VI" Workshop - Chair: [[MikeDean|Mike Dean]] - [[OOR/ConferenceCall_2011_11_22]]  
* 2011_11_22 - Tuesday: "Getting OOR Development Going - Take-VI" Workshop - Chair: [[MikeDean|Mike Dean]] - [[OOR/ConferenceCall_2011_11_22]]  


* 2011_11_17 - on the invitation of the [https://wiki.nci.nih.gov/display/VCDE/Ontology+Representation+WG Ontology Representation WG (ORWG)], [[PeterYim|Peter P. Yim]] and [[MichaelGruninger|Michael Grüninger]] presented an [http://ontolog.cim3.net/file/work/OOR/OOR_presentations_publications/The-OOR-Initiative_an-introduction--Yim-Dean-Obrst-Baclawski-Schneider-Gruninger_20111117a.pdf introduction to the OOR Initiative], and engaged in a Q&A / discussion with ORWG members to try to answer [https://wiki.nci.nih.gov/pages/viewpage.action?pageId=56799816 questions they may have about the OOR Initiative] and to invite ORWG members to join us in future collaborative efforts.  
* 2011_11_17 - on the invitation of the [https://wiki.nci.nih.gov/display/VCDE/Ontology+Representation+WG Ontology Representation WG (ORWG)], [[PeterYim|Peter P. Yim]] and [[MichaelGruninger|Michael Grüninger]] presented an [https://ontologforum.s3.amazonaws.com/OOR/OOR_presentations_publications/The-OOR-Initiative_an-introduction--Yim-Dean-Obrst-Baclawski-Schneider-Gruninger_20111117a.pdf introduction to the OOR Initiative], and engaged in a Q&A / discussion with ORWG members to try to answer [https://wiki.nci.nih.gov/pages/viewpage.action?pageId=56799816 questions they may have about the OOR Initiative] and to invite ORWG members to join us in future collaborative efforts.  


* 2011_11_08 - Tuesday: "Getting OOR Development Going - Take-V" Workshop - Chair: [[MikeDean|Mike Dean]] - "Getting OOR Development going, on Eclipse?" - Discussant: [[EricChan|Eric Chan]] - [[OOR/ConferenceCall_2011_11_08]]  
* 2011_11_08 - Tuesday: "Getting OOR Development Going - Take-V" Workshop - Chair: [[MikeDean|Mike Dean]] - "Getting OOR Development going, on Eclipse?" - Discussant: [[EricChan|Eric Chan]] - [[OOR/ConferenceCall_2011_11_08]]  
Line 177: Line 177:
* 2011_03_04 - Friday: OOR "Architecture & API Specification Development Workshop-I" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] - [[OOR/ConferenceCall_2011_03_04]]  
* 2011_03_04 - Friday: OOR "Architecture & API Specification Development Workshop-I" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] - [[OOR/ConferenceCall_2011_03_04]]  


* 2010.12.17 - '''OOR IPR Policy Adopted''' - [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2010_12_17#nid2KEF ref.] - see: [[OpenOntologyRepository_IPR]]  
* 2010.12.17 - '''OOR IPR Policy Adopted''' - [[OOR/ConferenceCall_2010_12_17]] - see: [[OpenOntologyRepository_IPR]]  
 
* 2010.12.12 - OOR.NET comes online (courtesy of CIM3): our OOR-sandbox at http://oor-01.cim3.net is now (also) accessible as http://sandbox.oor.net


* 2010_11_19 - Friday: OOR Panel Discussion - "(Post-BioPortal fork) OOR Architecture and API - Take-II" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[MichaelGruninger|Michael Grüninger]] - Panelists: KenBaclawski+ToddSchneider, AldoGangemi+AlessandroAdamou, JouniTuominen+KimViljanen, [[EricChan|Eric Chan]] - [[OOR/ConferenceCall_2010_11_19]]  
* 2010_11_19 - Friday: OOR Panel Discussion - "(Post-BioPortal fork) OOR Architecture and API - Take-II" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[MichaelGruninger|Michael Grüninger]] - Panelists: KenBaclawski+ToddSchneider, AldoGangemi+AlessandroAdamou, JouniTuominen+KimViljanen, [[EricChan|Eric Chan]] - [[OOR/ConferenceCall_2010_11_19]]  


* 2010.11.07 - The [http://iswc2010.semanticweb.org/node/48 Workshop] on Semantic Repositories for the Web ([http://www.ontologydynamics.org/od/index.php/seres2010/ SERES 2010]) co-located at [http://iswc2010.semanticweb.org/ ISWC 2010] was held in Shanghai, China - [[PeterYim|Peter P. Yim]] made a [http://ontolog.cim3.net/file/work/OOR/OOR_presentations_publications/OOR_SERES-2010--PeterYim_20101107.pdf keynote presentation on "The OOR Initiative"]  
* 2010.11.07 - The [http://iswc2010.semanticweb.org/node/48 Workshop] on Semantic Repositories for the Web ([http://www.ontologydynamics.org/od/index.php/seres2010/ SERES 2010]) co-located at [http://iswc2010.semanticweb.org/ ISWC 2010] was held in Shanghai, China - [[PeterYim|Peter P. Yim]] made a [https://ontologforum.s3.amazonaws.com/OOR/OOR_presentations_publications/OOR_SERES-2010--PeterYim_20101107.pdf keynote presentation on "The OOR Initiative"]  


* 2010_10_15 - Friday: OOR Project Team Member Conference Call - discussion on the (post-BioPortal fork) OOR Architecture and API - [[OOR/ConferenceCall_2010_10_15]]  
* 2010_10_15 - Friday: OOR Project Team Member Conference Call - discussion on the (post-BioPortal fork) OOR Architecture and API - [[OOR/ConferenceCall_2010_10_15]]  
Line 197: Line 195:
* 2010_09_09 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-1: an exposition on relevant IPR regimes - Keynote speaker: [[GeorgeStrawn|George Strawn]] - Chair: [[PeterYim|Peter P. Yim]] - Panelists: [[JamieClark]], [[JohnWilbanks|John Wilbanks]], [[BrucePerens|Bruce Perens]] - ConferenceCall_2010_09_09  
* 2010_09_09 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-1: an exposition on relevant IPR regimes - Keynote speaker: [[GeorgeStrawn|George Strawn]] - Chair: [[PeterYim|Peter P. Yim]] - Panelists: [[JamieClark]], [[JohnWilbanks|John Wilbanks]], [[BrucePerens|Bruce Perens]] - ConferenceCall_2010_09_09  


* 2010.05.05 - '''OOR-sandbox v2.5''' (powered by the NCBO [[BioPortal]] Core v2.5) is now online at: '''http://oor-01.cim3.net''' [[OOR_SandBox|ref.]]
* 2010.06.24 Thursday - [[MikeDean|Mike Dean]] & [[PeterYim|Peter P. Yim]] will be making a '''[https://ontologforum.s3.amazonaws.com/OOR/OOR_presentations_publications/OOR-SemTech_Jun2010.pdf presentation and demo on OOR]''' jointly authored by [[User:KennethBaclawski|Ken Baclawski]], [[MikeDean|Mike Dean]], [[ToddSchneider|Todd Schneider]] and [[PeterYim|Peter P. Yim]] at [http://semtech2010.semanticuniverse.com/ [[SemTech]] 2010] - San Francisco, CA, US - 21~25 June 2010 - (ref. their  [http://semtech2010.semanticuniverse.com/agenda.cfm?confid=42&scheduleDay=PRINT conference program])  
 
* 2010.06.24 Thursday - [[MikeDean|Mike Dean]] & [[PeterYim|Peter P. Yim]] will be making a '''[http://ontolog.cim3.net/file/work/OOR/OOR_presentations_publications/OOR-SemTech_Jun2010.pdf presentation and demo on OOR]''' jointly authored by [[User:KennethBaclawski|Ken Baclawski]], [[MikeDean|Mike Dean]], [[ToddSchneider|Todd Schneider]] and [[PeterYim|Peter P. Yim]] at [http://semtech2010.semanticuniverse.com/ [[SemTech]] 2010] - San Francisco, CA, US - 21~25 June 2010 - (ref. their  [http://semtech2010.semanticuniverse.com/agenda.cfm?confid=42&scheduleDay=PRINT conference program])  


* 2010.05.31 Monday - [http://www.ontologydynamics.org/od/index.php/ores2010/ ORES 2010]: the 1st International Workshop on Ontology Repositories and Editors for the Semantic Web co-located with [http://www.eswc2010.org/ ESWC 2010] (30 May ~ 2 Jun 2010, Heraklion, Greece)  
* 2010.05.31 Monday - [http://www.ontologydynamics.org/od/index.php/ores2010/ ORES 2010]: the 1st International Workshop on Ontology Repositories and Editors for the Semantic Web co-located with [http://www.eswc2010.org/ ESWC 2010] (30 May ~ 2 Jun 2010, Heraklion, Greece)  
** [[User:KennethBaclawski|Ken Baclawski]] was a keynote speaker there, and gave a '''[http://ontolog.cim3.net/file/work/OOR/OOR_presentations_publications/OOR-ORES-KenBaclawski_20100531.ppt presentation on OOR]''' to the workshop (remotely)  
** [[User:KennethBaclawski|Ken Baclawski]] was a keynote speaker there, and gave a '''[https://ontologforum.s3.amazonaws.com/OOR/OOR_presentations_publications/OOR-ORES-KenBaclawski_20100531.ppt presentation on OOR]''' to the workshop (remotely)  
 
* 2010.05.05 - OOR-sandbox v2.4 (powered by the NCBO [[BioPortal]] Core v2.4) is now online at: http://oor-01.cim3.net [http://ontolog.cim3.net/forum/oor-dev/2010-05/msg00001.html ref.]


* 2010_04_01 - Thursday: Joint OOR-Ontolog Panel Session: "OOR Use Cases - Take-3" - Chair: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] - Panelists: [[ToddSchneider|Todd Schneider]], [[MatthewHettinger|Matthew Hettinger]], [[User:KennethBaclawski|Ken Baclawski]] and [[MaximoGurmendez|Máximo Gurméndez]] - ConferenceCall_2010_04_01  
* 2010_04_01 - Thursday: Joint OOR-Ontolog Panel Session: "OOR Use Cases - Take-3" - Chair: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] - Panelists: [[ToddSchneider|Todd Schneider]], [[MatthewHettinger|Matthew Hettinger]], [[User:KennethBaclawski|Ken Baclawski]] and [[MaximoGurmendez|Máximo Gurméndez]] - ConferenceCall_2010_04_01  
Line 212: Line 206:
* 2010_02_19 - Friday: OOR Panel Discussion: "Coordinating our Open Ontology Repository Software Development" - Chair: [[MikeDean|Mike Dean]] - Panelists: [[JimChatigny|Jim Chatigny]], [[MichaelGruninger|Michael Grüninger]], [[User:KennethBaclawski|Ken Baclawski]], Natasha Noy - [[OOR/ConferenceCall_2010_02_19]]  
* 2010_02_19 - Friday: OOR Panel Discussion: "Coordinating our Open Ontology Repository Software Development" - Chair: [[MikeDean|Mike Dean]] - Panelists: [[JimChatigny|Jim Chatigny]], [[MichaelGruninger|Michael Grüninger]], [[User:KennethBaclawski|Ken Baclawski]], Natasha Noy - [[OOR/ConferenceCall_2010_02_19]]  


* 2010.02.12 - OOR-sandbox v2.1 (powered by the [[NCBO]] [[BioPortal]] v2.1 technology) is now online at: http://oor-01.cim3.net - the community is invited to upload your open ontologies there and help test out this public OOR instance - kindly provide feedback to [[OpenOntologyRepository|our mailing list(s)]]  
* Thu 2009_11_12 - [[MikeDean|Mike Dean]] made a Geospatial-OOR presentation at the [[SOCoP/Workshop_2009_11_12]]  


* 2010.01.22 - Announcement: our 2nd installation of the (public instance of) OOR-sandbox, running [[BioPortal]] v2.x) is now being staged at the url: http://oor-01f.cim3.net (once this install stablizes, it be moved to our ongoing OOR-sandbox url http://oor-01.cim3.net and replace the earlier install running [[BioPortal]] v1.x) ... Developers and users are encouraged to test the install out, and report any problem to the [oor-forum] (user issues) or [oor-dev] (software bugs and issues) mailing list.
* Tue 2009_11_10 - [[BartGajderowicz|Bart Gajderowicz]] made a presentation of "[https://ontologforum.s3.amazonaws.com/OOR/OOR_presentations_publications/OOR--BartGajderowicz_20091110.ppt The Open Ontology Repository]" to the [http://www.meetup.com/Toronto-Semantic-Web-Meetup-Group/calendar/11706873/ Toronto Semantic Web Meetup] (based on notes from KenBaclawski) - see: the [https://ontologforum.s3.amazonaws.com/OOR/OOR_presentations_publications/OOR--BartGajderowicz_20091110.ppt presentation here]  
** see: [[OOR_SandBox]]
 
* Thu 2009_11_12 - [[MikeDean|Mike Dean]] made a [http://ontolog.cim3.net/cgi-bin/wiki.pl?SOCoP/Workshop_2009_11_12#nid23XJ Geospatial-OOR presentation] at the [[SOCoP/Workshop_2009_11_12]]
 
* Tue 2009_11_10 - [[BartGajderowicz|Bart Gajderowicz]] made a presentation of "[http://ontolog.cim3.net/file/work/OOR/OOR_presentations_publications/OOR--BartGajderowicz_20091110.ppt The Open Ontology Repository]" to the [http://www.meetup.com/Toronto-Semantic-Web-Meetup-Group/calendar/11706873/ Toronto Semantic Web Meetup] (based on notes from KenBaclawski) - see: the [http://ontolog.cim3.net/file/work/OOR/OOR_presentations_publications/OOR--BartGajderowicz_20091110.ppt presentation here]  


* 2009_10_25~29 - OOR presentations and get together during ISWC 2009 - see: [[OOR/ISWC2009]]  
* 2009_10_25~29 - OOR presentations and get together during ISWC 2009 - see: [[OOR/ISWC2009]]  
Line 236: Line 225:


* The NCBO [[BioPortal]] (which forms the code-base for our OOR platform development) software architecture and UML Model was reverse engineered and posted by [[ToddSchneider|Todd Schneider]]  
* The NCBO [[BioPortal]] (which forms the code-base for our OOR platform development) software architecture and UML Model was reverse engineered and posted by [[ToddSchneider|Todd Schneider]]  
** 2009_05_19 - UML Model of the NCBO [[BioPortal]] 2.0 Core posted - see overview at: http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository_Architecture#nid1YKD
** 2009_05_19 - UML Model of the NCBO [[BioPortal]] 2.0 Core posted - see overview at: [[OpenOntologyRepository_Architecture]]
** 2009_06_14 - the full UML model of the NCBO [[BioPortal]] 2.0 is available at: http://ontolog.cim3.net/file/work/OOR/oor-dev/BioPortal_3Mar2009_UML-Model_ToddSchneider_20090614/index.html  
** 2009_06_14 - the full UML model of the NCBO [[BioPortal]] 2.0 is available at: https://ontologforum.s3.amazonaws.com/OOR/oor-dev/BioPortal_3Mar2009_UML-Model_ToddSchneider_20090614/index.html  
** 2009_07_29 - the UML-EA diagrams of the NCBO [[BioPortal]] system 2.1d (v1016 of Jul-2009) is available at: http://ontolog.cim3.net/file/work/OOR/oor-dev/BioPortal_ver1016_UML-EA_Model--NCBO_ToddSchneider_20090729a/BioPortal_v1016_Jul2009_HTML/  
** 2009_07_29 - the UML-EA diagrams of the NCBO [[BioPortal]] system 2.1d (v1016 of Jul-2009) is available at: https://ontologforum.s3.amazonaws.com/OOR/oor-dev/BioPortal_ver1016_UML-EA_Model--NCBO_ToddSchneider_20090729a/BioPortal_v1016_Jul2009_HTML/  


* 2009_04_16 - Thursday: OOR Use Cases Discussion Session - Chair: [[KatherineGoodier|Katherine Goodier]] - ConferenceCall_2009_04_16  
* 2009_04_16 - Thursday: OOR Use Cases Discussion Session - Chair: [[KatherineGoodier|Katherine Goodier]] - ConferenceCall_2009_04_16  
* 2009.02.19 - Our first public sandbox instance of an OOR, based on the NCBO [[BioPortal]] technology (and donated by an joint effort of NCBO, Stanford-BMIR and CIM3) is now online - see: http://oor-01.cim3.net


* 2009_02_19 - Thursday: Joint Ontolog-OOR Panel Discussion: "Getting OOR Development Off the Ground (Take-2): the work begins" - Chair: [[ToddSchneider|Todd Schneider]]; Panelists: Mark Musen, Natasha Noy, [[MikeDean|Mike Dean]], [[PaulBuitelaar|Paul Buitelaar]] / [[AndreasHarth|Andreas Harth]], [[MathieuDaquin|Mathieu Daquin]], [[User:KennethBaclawski|Ken Baclawski]], [[MichaelGruninger|Michael Grüninger]] - ConferenceCall_2009_02_19  
* 2009_02_19 - Thursday: Joint Ontolog-OOR Panel Discussion: "Getting OOR Development Off the Ground (Take-2): the work begins" - Chair: [[ToddSchneider|Todd Schneider]]; Panelists: Mark Musen, Natasha Noy, [[MikeDean|Mike Dean]], [[PaulBuitelaar|Paul Buitelaar]] / [[AndreasHarth|Andreas Harth]], [[MathieuDaquin|Mathieu Daquin]], [[User:KennethBaclawski|Ken Baclawski]], [[MichaelGruninger|Michael Grüninger]] - ConferenceCall_2009_02_19  
Line 256: Line 243:
* 2008_04_29 - '''[[OntologySummit2008_Communique|OntologySummit2008 Communiqué: Towards an Open Ontology Repository]]''' published  
* 2008_04_29 - '''[[OntologySummit2008_Communique|OntologySummit2008 Communiqué: Towards an Open Ontology Repository]]''' published  


* 2008_04_29 - Our team made a presentation with our history, status, OOR rationale and requirements, and a proposed roadmap at the [[OntologySummit2008|Ontology Summit 2008]] - see: http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2008/FaceToFaceAgenda#nid1BLS
* 2008_04_29 - Our team made a presentation with our history, status, OOR rationale and requirements, and a proposed roadmap at the [[OntologySummit2008|Ontology Summit 2008]] - see: [[OntologySummit2008/FaceToFaceAgenda]]


* 2008_04_10 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Developing an Ontology of Ontologies for OOR" - Co-chairs: [[BarrySmith|Barry Smith]] & [[MichaelGruninger|Michael Grüninger]]; Panelists: [[MichaelGruninger|Michael Grüninger]], [[PeterHaase|Peter Haase]], Natasha Noy & [[ElisaKendall|Elisa Kendall]] - ConferenceCall_2008_04_10  
* 2008_04_10 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Developing an Ontology of Ontologies for OOR" - Co-chairs: [[BarrySmith|Barry Smith]] & [[MichaelGruninger|Michael Grüninger]]; Panelists: [[MichaelGruninger|Michael Grüninger]], [[PeterHaase|Peter Haase]], Natasha Noy & [[ElisaKendall|Elisa Kendall]] - ConferenceCall_2008_04_10  
Line 286: Line 273:
* '''3. establishing best practices for expressing interoperable ontology and taxonomy work in registry-repositories.'''  
* '''3. establishing best practices for expressing interoperable ontology and taxonomy work in registry-repositories.'''  


:''(ref. http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2008_01_03#nid16PN )''  
:''(ref. [[ConferenceCall_2008_01_03]])''  


... '''where,'''  
... '''where,'''  
Line 299: Line 286:


* All active members to enumerate what they are ready to 'bring to the table' with respect to this initiative.  
* All active members to enumerate what they are ready to 'bring to the table' with respect to this initiative.  
** please make your entry (along with links and references) at: [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ActiveMemberContribution OOR/[[ActiveMemberContribution]]]
** please make your entry (along with links and references) at: [[OOR/ActiveMemberContribution]].


== Project Work-in-Progress  ==
== Project Work-in-Progress  ==
Line 323: Line 310:
* [[OpenOntologyRepository_Development]] - ongoing OOR-related development projects and activities  
* [[OpenOntologyRepository_Development]] - ongoing OOR-related development projects and activities  


* [[OpenOntologyRepository_IPR]] - a mini-series of virtual events were featured in Sep-2010 to address Intellectual Property Rights (IPR) issues relating to OOR in particular (which will, invariably, cover IPR issues relating to ontology in general.) See the [http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository_IPR/Discussion#nid2JRN (draft) consensus IPR Policy for the OOR Initiative] that emerged shortly afterwards.  
* [[OpenOntologyRepository_IPR]] - a mini-series of virtual events were featured in Sep-2010 to address Intellectual Property Rights (IPR) issues relating to OOR in particular (which will, invariably, cover IPR issues relating to ontology in general.) See the [[OpenOntologyRepository_IPR/Discussion|(draft) consensus IPR Policy for the OOR Initiative]] that emerged shortly afterwards.  


== Project Plan  ==
== Project Plan  ==
Line 337: Line 324:
== Discussion Archives, Shared-File Workspace & System Development Repository  ==
== Discussion Archives, Shared-File Workspace & System Development Repository  ==


* '''Discussion (Mailing) Lists & Message Archives:'''
* '''Shared-File Workspace:''' . . .
** '''[oor-forum]''' - archives to the (e-mail list) discussion on the "Open Ontology Repository (OOR)" initiative - http://ontolog.cim3.net/forum/oor-forum/
** OOR team's work - [https://ontologforum.s3.amazonaws.com/OpenOntologyRepository/] . . . ''(which we have IPR on)''  
*** to participate in the virtual discourse, please subscribe to this [oor-forum] list by sending an empty (no message body is needed) message to: oor-forum-join [at] ontolog.cim3.net ; alternatively, go to the list-info/maintenance page at: http://ontolog.cim3.net/mailman/listinfo/oor-forum ... (email <peter.yim @ cim3.com> if you have any question.)
** '''[oor-dev]''' - archives to the (e-mail list) discussion on the "Open Ontology Repository" platform/tools development - http://ontolog.cim3.net/forum/oor-dev/
*** to participate in the virtual discourse, please subscribe to this [oor-dev] list by sending an empty (no message body is needed) message to: oor-dev-join [at] ontolog.cim3.net ; alternatively, go to the list-info/maintenance page at: http://ontolog.cim3.net/mailman/listinfo/oor-dev ... (email <peter.yim @ cim3.com> if you have any question.)
** '''[oor-users]''' - archives to the (e-mail list) discussion among the "Open Ontology Repository" users - http://ontolog.cim3.net/forum/oor-users/
*** to participate in the virtual discourse, please subscribe to this [oor-users] list by sending an empty (no message body is needed) message to: oor-users-join [at] ontolog.cim3.net ; alternatively, go to the list-info/maintenance page at: http://ontolog.cim3.net/mailman/listinfo/oor-users ... (email <peter.yim @ cim3.com> if you have any question.)
 
* '''Shared-File Workspace:''' . . . ''(open)''
** OOR team's work - http://ontolog.cim3.net/file/work/OpenOntologyRepository/ . . . ''(which we have IPR on)''
** Outside (reference) work, etc. - http://ontolog.cim3.net/file/resource/OpenOntologyRepository/ . . . ''(which we may re-publish here, but have no IPR on)''  
** content of this shared-file workspace are open to all read access, browsers, hyperlinking and search
** write access is limited to team members only, and is password protected. To gain write access, please refer to details at: http://ontolog.cim3.net/cgi-bin/wiki.pl?ToolsCollaboration#nidAVL


* '''Software development''' work is to be checked into the code repository (gforge-based subversion repository) '''at [[SemWebCentral]]'''  
* '''Software development''' work is to be checked into the code repository (gforge-based subversion repository) '''at [[SemWebCentral]]'''  
Line 358: Line 334:
** see documentation at: http://www.bioontology.org/wiki/index.php/NCBO-OOR_Development  
** see documentation at: http://www.bioontology.org/wiki/index.php/NCBO-OOR_Development  
*** and http://www.bioontology.org/wiki/index.php/NCBO_Developer_Communications  
*** and http://www.bioontology.org/wiki/index.php/NCBO_Developer_Communications  
 
** NCBO-OOR development documentation - [http://www.bioontology.org/wiki/index.php/NCBO-OOR_Development]
* our '''open, public sandbox instance of OOR is at: http://sandbox.oor.net/''' (or http://oor-01.cim3.net/)
** NCBO-OOR development documentation - http://www.bioontology.org/wiki/index.php/NCBO-OOR_Development  
 
* You are invited to '''[[OpenOntologyRepository|join us]]'''


== Conference Call, Meeting & Workshop  ==
== Conference Call, Meeting & Workshop  ==
Line 477: Line 449:
* 2008_05_09 - Friday: OOR Project Team Member Conference Call - [[OOR/ConferenceCall_2008_05_09]]  
* 2008_05_09 - Friday: OOR Project Team Member Conference Call - [[OOR/ConferenceCall_2008_05_09]]  
* 2008_04_28 - 04_29 - Monday~Tuesday: [[OntologySummit2008|Ontology Summit 2008]] face-to-face workshop, held during NIST's Interoperability Week (Gaithersburg, Maryland, USA) - see: [[OntologySummit2008/FaceToFaceAgenda]]  
* 2008_04_28 - 04_29 - Monday~Tuesday: [[OntologySummit2008|Ontology Summit 2008]] face-to-face workshop, held during NIST's Interoperability Week (Gaithersburg, Maryland, USA) - see: [[OntologySummit2008/FaceToFaceAgenda]]  
o Our team made a presentation with our history, status, OOR rationale and requirements, and a proposed roadmap at the [[OntologySummit2008|Ontology Summit 2008]] - see: http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2008/FaceToFaceAgenda#nid1BLS
o Our team made a presentation with our history, status, OOR rationale and requirements, and a proposed roadmap at the [[OntologySummit2008|Ontology Summit 2008]] - see: [[OntologySummit2008/FaceToFaceAgenda]]
* 2008_04_18 - Friday: OOR Project Team Member Conference Call - [[OOR/ConferenceCall_2008_04_18]]  
* 2008_04_18 - Friday: OOR Project Team Member Conference Call - [[OOR/ConferenceCall_2008_04_18]]  
* 2008_04_10 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Developing an Ontology of Ontologies for OOR" - Co-chairs: [[BarrySmith|Barry Smith]] & [[MichaelGruninger|Michael Gr&uuml;ninger]]; Panelists: [[MichaelGruninger|Michael Gr&uuml;ninger]], [[PeterHaase|Peter Haase]], Natasha Noy & [[ElisaKendall|Elisa Kendall]] - ConferenceCall_2008_04_10  
* 2008_04_10 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Developing an Ontology of Ontologies for OOR" - Co-chairs: [[BarrySmith|Barry Smith]] & [[MichaelGruninger|Michael Gr&uuml;ninger]]; Panelists: [[MichaelGruninger|Michael Gr&uuml;ninger]], [[PeterHaase|Peter Haase]], Natasha Noy & [[ElisaKendall|Elisa Kendall]] - ConferenceCall_2008_04_10  
Line 515: Line 487:
== Publications & References  ==
== Publications & References  ==


* [[User:KennethBaclawski|Ken Baclawski]] and [[ToddSchneider|Todd Schneider]] presented on the [[OOR]] initiative at [http://iswc2009.semanticweb.org/ ISWC 2009] with this [http://ontolog.cim3.net/file/work/OOR/OOR_ISWC-2009_presentation/OOR_ISWC2009_CK-workshop_paper6--KenBaclawski-ToddSchneider_20091025.pdf paper] and [http://ontolog.cim3.net/file/work/OOR/OOR_ISWC-2009_presentation/OOR_ISWC_2009_Poster--ToddSchneider-KenBaclawski_Oct-2009.pdf poster] - 2009.10.25~29 - see also: [[OOR/ISWC2009]]  
* [[User:KennethBaclawski|Ken Baclawski]] and [[ToddSchneider|Todd Schneider]] presented on the [[OOR]] initiative at [http://iswc2009.semanticweb.org/ ISWC 2009] with this [https://ontologforum.s3.amazonaws.com/OOR/OOR_ISWC-2009_presentation/OOR_ISWC2009_CK-workshop_paper6--KenBaclawski-ToddSchneider_20091025.pdf paper] and [https://ontologforum.s3.amazonaws.com/OOR/OOR_ISWC-2009_presentation/OOR_ISWC_2009_Poster--ToddSchneider-KenBaclawski_Oct-2009.pdf poster] - 2009.10.25~29 - see also: [[OOR/ISWC2009]]  


* [[User:KennethBaclawski|Ken Baclawski]] made a presentation on OOR at a meeting held at [http://www.mbari.org/ MBARI] on 2009.06.15 - http://ontolog.cim3.net/file/work/OOR/OOR_presentations_publications/OOR-MBARI-Presentation--KenBaclawski_20090615.ppt  
* [[User:KennethBaclawski|Ken Baclawski]] made a presentation on OOR at a meeting held at [http://www.mbari.org/ MBARI] on 2009.06.15 - https://ontologforum.s3.amazonaws.com/OOR/OOR_presentations_publications/OOR-MBARI-Presentation--KenBaclawski_20090615.ppt  


* [[MikeDean|Mike Dean]] and [[PeterYim|Peter P. Yim]] gave a "lightning-talk" at ISWC 2008 on OOR (2008.10.30) - http://ontolog.cim3.net/file/work/OOR/OOR_presentations_publications/OOR_iswc2008_lightning-talk--MikeDean-PeterYim_20081030.pdf  
* [[MikeDean|Mike Dean]] and [[PeterYim|Peter P. Yim]] gave a "lightning-talk" at ISWC 2008 on OOR (2008.10.30) - https://ontologforum.s3.amazonaws.com/OOR/OOR_presentations_publications/OOR_iswc2008_lightning-talk--MikeDean-PeterYim_20081030.pdf  


* Presentation on the OOR initiative at the CENDI/NKOS workshop (at the [[WorldBank|World Bank]] 2008.09.11) by [[FrankOlken|Frank Olken]] - [http://ontolog.cim3.net/file/work/OOR/OOR-presentation--FrankOlken_20080911/cendi_oori_talk_v6-0_FrankOlken_20080911.pdf slides]  
* Presentation on the OOR initiative at the CENDI/NKOS workshop (at the [[WorldBank|World Bank]] 2008.09.11) by [[FrankOlken|Frank Olken]] - [https://ontologforum.s3.amazonaws.com/OOR/OOR-presentation--FrankOlken_20080911/cendi_oori_talk_v6-0_FrankOlken_20080911.pdf slides]  


* Presentation by the OOR team at the [[OntologySummit2008|Ontology Summit 2008]] face-to-face workshop (2008.04.29) - [http://ontolog.cim3.net/file/work/OntologySummit2008/2008-04-2829_F2F-workshop/OntologySummit2008_OOR-Presentation--MikeDean-LeoObrst-PeterYim_20080429.ppt slides]  
* Presentation by the OOR team at the [[OntologySummit2008|Ontology Summit 2008]] face-to-face workshop (2008.04.29) - [https://ontologforum.s3.amazonaws.com/OntologySummit2008/2008-04-2829_F2F-workshop/OntologySummit2008_OOR-Presentation--MikeDean-LeoObrst-PeterYim_20080429.ppt slides]  
** see: http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2008/FaceToFaceAgenda#nid1BLS
** see: [[OntologySummit2008/FaceToFaceAgenda]]


* [[OntologySummit2008|Ontology Summit 2008]] ... and, in particular, the '''[[OntologySummit2008_Communique]]'''  
* [[OntologySummit2008|Ontology Summit 2008]] ... and, in particular, the '''[[OntologySummit2008_Communique]]'''  
Line 533: Line 505:
** '''[[OntologySummit2008_Communique]]'''  
** '''[[OntologySummit2008_Communique]]'''  


* [http://ontolog.cim3.net/file/resource/OOR/eswc2010_ORES2010-workshop-proceedings.pdf Proceedings from the Ontology Repositories and Editors for the Semantic Web] "[http://www.ontologydynamics.org/od/index.php/ores2010/ ORES 2010]" Workshop (colocated with [http://www.eswc2010.org/ ESWC 2010]) - Heraklion, Greece - May 31, 2010 - http://ontolog.cim3.net/file/resource/OOR/eswc2010_ORES2010-workshop-proceedings.pdf
* [https://ontologforum.s3.amazonaws.com/OOR/eswc2010_ORES2010-workshop-proceedings.pdf Proceedings from the Ontology Repositories and Editors for the Semantic Web] "[http://www.ontologydynamics.org/od/index.php/ores2010/ ORES 2010]" Workshop (colocated with [http://www.eswc2010.org/ ESWC 2010]) - Heraklion, Greece - May 31, 2010


* Open Repositories Conference 2008: Southamption, UK, Apr 1-4, 2008  
* Open Repositories Conference 2008: Southamption, UK, Apr 1-4, 2008  
** see: http://or08.ecs.soton.ac.uk/index.html  
** see: http://or08.ecs.soton.ac.uk/index.html  
*** ref. (LeoObrst's post): http://ontolog.cim3.net/forum/oor-forum/2008-01/msg00039.html
* ...''(put link here)''...
** ...''(put description and other pertinent info here)''...


== Funding  ==
== Funding  ==


* OOR preliminary proposal for the NSF 07-601 grant solicitation was submitted on 2008.11.13 - see: [[OpenOntologyRepository_Proposal/Nsf_07601]]  
* OOR preliminary proposal for the NSF 07-601 grant solicitation was submitted on 2008.11.13 - see: [[OpenOntologyRepository_Proposal/Nsf_07601]]  
** the proposal, unfortunately, was not accepted - see discussion at: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2009_05_01#nid1X61


* The seeking of individual party or small team joint project funding proposals under the general OOR label is encouraged and has been rather successful. The following is a partial list of projects that were funded:  
* The seeking of individual party or small team joint project funding proposals under the general OOR label is encouraged and has been rather successful. The following is a partial list of projects that were funded:  
** Stanford-BMIR - PI: Mark Musen - NIH: NCBO grant awarded  
** Stanford-BMIR - PI: Mark Musen - NIH: NCBO grant awarded  
** Northeastern University - [[User:KennethBaclawski|Ken Baclawski]] with PI: [[NeilSarkar|Neil Sarkar]]  - [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ActiveMemberContribution#nid1AWJ NIH/NLM grant] awarded  
** Northeastern University - [[User:KennethBaclawski|Ken Baclawski]] with PI: [[NeilSarkar|Neil Sarkar]]  - [[OOR/ActiveMemberContribution|NIH/NLM grant]] awarded  
** University of Wisconsin et al (joint project) - PI: [[NancyWiegand|Nancy Wiegand]] - NSF: INTEROP grant awarded  
** University of Wisconsin et al (joint project) - PI: [[NancyWiegand|Nancy Wiegand]] - NSF: INTEROP grant awarded  


Line 558: Line 525:
== The Team  ==
== The Team  ==


* '''Members:''' . . . ''the initial list (which has since been updated now) included those who were at (or responded to) [[ConferenceCall_2008_01_03|the OOR Planning Meeting]] or [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2008_01_23#nid17D9 the Founding Members Meeting]'' - this list include active members as well as observers too (who may or may not have clearly identified themselves as such)  
* '''Members:''' . . . ''the initial list (which has since been updated now) included those who were at (or responded to) [[ConferenceCall_2008_01_03|the OOR Planning Meeting]] or [[OOR/ConferenceCall_2008_01_23|the Founding Members Meeting]]'' - this list include active members as well as observers too (who may or may not have clearly identified themselves as such)  
** [[AndersTell|Anders Tell]]  
** [[AndersTell|Anders Tell]]  
** [[AtillaElci|Atilla Elci]]  
** [[AtillaElci|Atilla Elci]]  
Line 643: Line 610:
* [[LeoObrst|Leo Obrst]] - <lobrst@mitre.org>  
* [[LeoObrst|Leo Obrst]] - <lobrst@mitre.org>  
* [[PeterYim|Peter P. Yim]] - <peter.yim@cim3.com>  
* [[PeterYim|Peter P. Yim]] - <peter.yim@cim3.com>  
----
Goto an [http://oor.net/index1.html OOR instance]: '''[ [http://sandbox.oor.net OOR-sandbox] ] . [ [http://socop.oor.net SOCoP] ] . [ [http://colore.oor.net COLORE] ] . [ [http://ontohub.oor.net Ontohub] ] . [ [http://mmisw.oor.net MMI-ORR] ] . [ [http://bioportal.bioontology.org/ BioPortal] ] . [ [http://sigma.oor.net Sigma-KEE] ]'''


----
----

Latest revision as of 20:20, 2 September 2024

OOR-Logo.png

Home What's New Mission Workspace Events Key Work Content Resources & References Funding IPR The Team

Open Ontology Repository (OOR) Initiative - Home Page

BioPortal

The OOR Mission

Priorities & Most Critical Tasks At Hand

updated: 2012.07.10

  • 1. Systematically engage other communities to advance the state-of-the-art as well as to solicit content contributions
    • collaborate and solicit content contributions from the communities engaging in ontology research, development, engineering and applications
    • collaborate and solicit content contributions from the communities engaging in digital content and knowledge organization structures
  • 2. Identify compelling and relevant reference implementations and use cases of OOR, with a focus on demonstrating the application and value of OOR
    • consider possibilities in: bigdata, standards, ... bridging db-schema, xml, uml, ...
  • 3. Prepare and adopt an OOR system architecture
    • define and adopt a set of API's
    • define and adopt the set of ontology metadata (as an extension of OMV) that authors of the ontology are required to provide when they upload ontologies to the OOR
    • define and adopt a core development platform
  • 4. Initiate implementation of key development priorities
    • build out "gatekeeping" and move from just having an OOR-sandbox to having available instances of an OOR-sandbox and an OOR-production
    • add CL support to OOR
    • federation
  • 5. get the work of this team funded; and help/support/coordinate members' teaming up and getting funded
    • start a regular "Funding" workshop series (just like Architecture+API, Metadata, Code-development, etc.)
  • 6. continue with efforts in publicity and outreach
    • systematically get OOR-related presentations and papers into pertinent conferences and workshops
  • 7. set up policies and process for contributing to OOR work
    • setup clear and easy policies and process to engage developers and have them contribute code
    • getting ourselves into a position where team members can contribute code
  • 8. regularly review requirements and existing standards to make sure we are on track

What's New

. . .

  • Month of August_2013 - no community events planned ... Have a wonderful summer break!
  • 2013_07_30 - Tuesday: OOR Hackathon-III: The "OOR-Ontohub-Gatekeeper API - 3" Hackathon Session - Co-chairs: Till Mossakowski & Ken Baclawski - [[[OOR/ConferenceCall_2013_07_30]]
  • 2012_09_20 - Thursday: Joint CL-IAOA-Ontolog virtual discussion session: "Revision of the Common Logic Standard" - Chair: Michael Grüninger - ConferenceCall_2012_09_20
  • 2012_07_17 - Tuesday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-3: "Standardisation Coordination and Ontology Repositories" - Co-chairs: Michael Grüninger & John Bateman - ConferenceCall_2012_07_17
  • 2011_10_20 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-1: Introducing the ISO NP 17347 "Ontology Integration and Interoperability (OntoIOp)" Standardization Effort - Co-chairs: John Bateman & Michael Grüninger - ConferenceCall_2011_10_20
  • 2010_10_15 - Friday: OOR Project Team Member Conference Call - discussion on the (post-BioPortal fork) OOR Architecture and API - OOR/ConferenceCall_2010_10_15
  • 2010_09_30 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-3: discussion and consensus on licensing arrangements for the OOR Initiative, and positions we might take on related IPR issues - chair: Leo Obrst - Panelists: Peter P. Yim, Mike Dean, Bruce Perens, JamieClark - ConferenceCall_2010_09_30
  • 2010_09_16 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-2: what are the IPR issues relating to open ontology repositories (and ontologies in general)? - Chair: Mark Musen - Panelists: Cameron Ross, Alan Rector, John F. Sowa, Bruce Perens, John Wilbanks, Peter P. Yim - ConferenceCall_2010_09_16
  • 2010_09_09 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-1: an exposition on relevant IPR regimes - Keynote speaker: George Strawn - Chair: Peter P. Yim - Panelists: JamieClark, John Wilbanks, Bruce Perens - ConferenceCall_2010_09_09
  • 2010.05.31 Monday - ORES 2010: the 1st International Workshop on Ontology Repositories and Editors for the Semantic Web co-located with ESWC 2010 (30 May ~ 2 Jun 2010, Heraklion, Greece)
  • 2009_10_25~29 - OOR presentations and get together during ISWC 2009 - see: OOR/ISWC2009
  • 2009_07_16 - Thursday: Joint Ontolog-OOR Panel Discussion: "Integrated tools for ontology development and management: A field guide to the Stanford technology" - Chair: Mark Musen - Panelists: Tania Tudorache, Tim Redmond, Natasha Noy - ConferenceCall_2009_07_16
  • 2009_04_16 - Thursday: OOR Use Cases Discussion Session - Chair: Katherine Goodier - ConferenceCall_2009_04_16
  • 2008_01_03 - Thursday: Open Ontology Repository initiative - Planning Meeting - Co-conveners: Peter P. Yim, Leo Obrst & Mike Dean - ConferenceCall_2008_01_03

Key Date(s) to Note

(insert content below)

Project Mission

The charter of the Open Ontology Repository (OOR) Initiative is to the promote the global use and sharing of ontologies by:

  • 1. establishing a hosted registry-repository;
  • 2. enabling and facilitating open, federated, collaborative ontology repositories, and
  • 3. establishing best practices for expressing interoperable ontology and taxonomy work in registry-repositories.
(ref. ConferenceCall_2008_01_03)

... where,

"An ontology repository is a facility where ontologies and related information artifacts can be stored, retrieved and managed."

Note that the "Open Ontology Repository (OOR) Initiative" is supposed to be an independent effort, and is only being incubated in the Ontolog collaborative work environment, for the time being.

Current Action Items (responsible/champion)

  • All members who don't yet have a populated "namesake page" on this wiki to put their respective affiliation, (obfuscated) email address and bio's there.
  • All active members to enumerate what they are ready to 'bring to the table' with respect to this initiative.

Project Work-in-Progress

We are in the process of establishing the following

  • OpenOntologyRepository_Scope - documentation related to this OOR initiative's mission, charter, objectives, goals, terms of reference, definitions, scope, ... etc.

Project Plan

  • Establish Definitions and Scope
  • Approach & Process
  • Plan & Timeline
  • Deliverables & Deadlines

Discussion Archives, Shared-File Workspace & System Development Repository

  • Shared-File Workspace: . . .
    • OOR team's work - [1] . . . (which we have IPR on)

Conference Call, Meeting & Workshop

o Our team made a presentation with our history, status, OOR rationale and requirements, and a proposed roadmap at the Ontology Summit 2008 - see: OntologySummit2008/FaceToFaceAgenda

Key Content Pages for the OOR Initiative

Publications & References

Resources & References to Related Work

Funding

  • The seeking of individual party or small team joint project funding proposals under the general OOR label is encouraged and has been rather successful. The following is a partial list of projects that were funded:

IPR Policy

see: the official OOR-IPR Policy as adopted by the team on 2010.12.17 after a series of meetings, consultations and discussions.

The Team

  • Observers: . . . those who are subscribed to the mailing list, but indicated their level of participation or responded to the meeting calls ... feel free to change your own membership category!

You are Invited to Join us in this Global OOR Initiative

Send any question you may have about this Initiative, or express your intent to join the team by emailing the OOR co-conveners:

Home What's New Mission Workspace Events Key Work Content Resources & References Funding IPR The Team

Retrieved from "https://ontologforum.com/index.php?title=OpenOntologyRepository&oldid=5043"